| TF name | Position | PWM scan score |
| TorR | 333-342 | 11.568 |
| NarP | 302-308 | 10.661 |
| Rob | 373-393 | 10.182 |
| Mlc | 366-388 | 8.879 |
| GcvA | 324-352 | 8.574 |
| IHF | 334-346 | 8.297 |
| ArgP | 159-171 | 7.874 |
| MarA | 377-397 | 7.824 |
| Lrp | 316-327 | 7.689 |
| DnaA | 166-174 | 7.116 |
| SoxS | 213-230 | 7.086 |
| LacI | 32-52 | 6.778 |
| Fis | 374-394 | 6.707 |
| AraC | 212-229 | 6.628 |
| FadR | 27-43 | 6.261 |
| FNR | 328-349 | 6.222 |
| Nac | 341-355 | 6.193 |
| H-NS | 339-353 | 6.164 |
| NarL | 19-25 | 6.131 |
| CRP | 376-397 | 5.806 |
| ArgR | 381-396 | 5.405 |
| NtrC | 168-184 | 5.342 |
| CueR | 171-189 | 5.283 |
| OmpR | 373-392 | 5.181 |
| MelR | 217-234 | 5.065 |
| GlpR | 219-238 | 5.002 |