| TF name | Position | PWM scan score |
| PurR | 7-22 | 15.109 |
| MarA | 202-222 | 12.184 |
| FadR | 284-300 | 10.814 |
| GadE | 189-208 | 9.929 |
| IHF | 382-394 | 9.866 |
| RhaS | 65-81 | 8.765 |
| H-NS | 323-337 | 8.579 |
| MalT | 80-89 | 7.992 |
| FNR | 107-128 | 7.712 |
| GlpR | 317-336 | 7.513 |
| GcvA | 329-357 | 7.485 |
| NtrC | 133-149 | 7.385 |
| XylR | 206-223 | 7.153 |
| PhoB | 191-210 | 6.967 |
| Fis | 16-36 | 6.902 |
| NarL | 393-399 | 6.744 |
| TorR | 46-55 | 6.366 |
| PhoP | 377-393 | 6.262 |
| AraC | 162-179 | 6.234 |
| CpxR | 368-382 | 5.898 |
| NarP | 228-234 | 5.746 |
| ArgP | 11-23 | 5.581 |
| LacI | 274-294 | 5.106 |
| Rob | 319-339 | 5.001 |