| TF name | Position | PWM scan score |
| PurR | 356-371 | 15.109 |
| Nac | 157-171 | 12.407 |
| MarA | 201-221 | 10.202 |
| ArgR | 95-110 | 9.823 |
| Fis | 54-74 | 9.034 |
| NarP | 340-346 | 8.877 |
| CRP | 200-221 | 8.723 |
| H-NS | 5-19 | 8.117 |
| MetJ | 314-321 | 7.980 |
| IHF | 155-167 | 7.923 |
| Ada | 290-317 | 7.912 |
| DnaA | 64-72 | 7.605 |
| SoxS | 152-169 | 7.247 |
| PhoB | 103-122 | 7.178 |
| NarL | 78-84 | 7.107 |
| TorR | 61-70 | 7.088 |
| UlaR | 248-267 | 7.026 |
| OmpR | 6-25 | 6.949 |
| GcvA | 211-239 | 6.790 |
| MalT | 308-317 | 6.725 |
| Lrp | 95-106 | 6.346 |
| CpxR | 205-219 | 6.315 |
| LexA | 93-112 | 6.042 |
| AraC | 134-151 | 5.961 |
| UxuR | 273-290 | 5.918 |
| FNR | 77-98 | 5.783 |
| ArgP | 360-372 | 5.581 |
| RcsB | 9-22 | 5.492 |
| DeoR | 153-168 | 5.321 |
| IdnR | 2-17 | 5.199 |
| NagC | 62-84 | 5.170 |