| TF name | Position | PWM scan score |
| ArcA | 238-298 | 15.935 |
| AgaR | 237-260 | 13.734 |
| UlaR | 268-287 | 13.560 |
| PhoP | 249-265 | 13.181 |
| NorR | 321-337 | 12.443 |
| CueR | 105-123 | 11.052 |
| CRP | 264-285 | 10.794 |
| CysB | 245-286 | 10.288 |
| PhoB | 167-186 | 9.407 |
| TorR | 275-284 | 9.317 |
| LacI | 304-324 | 9.279 |
| ModE | 360-386 | 8.509 |
| MalT | 77-86 | 8.482 |
| GalR | 289-304 | 8.309 |
| GalS | 289-304 | 8.309 |
| IHF | 240-252 | 8.241 |
| H-NS | 356-370 | 8.240 |
| ArgR | 353-368 | 8.100 |
| OmpR | 252-271 | 7.895 |
| FNR | 361-382 | 7.652 |
| Lrp | 176-187 | 7.559 |
| GcvA | 271-299 | 7.532 |
| Nac | 320-334 | 7.466 |
| RcsB | 256-269 | 6.566 |
| GntR | 343-362 | 6.497 |
| MetR | 262-285 | 6.477 |
| NarL | 295-301 | 6.428 |
| FhlA | 72-111 | 6.312 |
| DnaA | 62-70 | 6.047 |
| MetJ | 324-331 | 6.040 |
| MarA | 364-384 | 5.913 |
| Rob | 262-282 | 5.854 |
| Fis | 350-370 | 5.839 |
| Ada | 237-264 | 5.792 |
| Mlc | 256-278 | 5.758 |
| XylR | 173-190 | 5.701 |
| DeoR | 170-185 | 5.571 |
| AraC | 48-65 | 5.339 |
| UxuR | 264-281 | 5.265 |
| ArgP | 175-187 | 5.211 |
| CpxR | 269-283 | 5.101 |
| NarP | 138-144 | 5.094 |