| TF name | Position | PWM scan score |
| Fis | 189-209 | 10.918 |
| MarA | 8-28 | 10.293 |
| ArcA | 148-208 | 10.098 |
| NagC | 172-194 | 9.993 |
| ModE | 252-278 | 9.642 |
| ArgR | 196-211 | 9.532 |
| IHF | 182-194 | 8.934 |
| XylR | 182-199 | 8.566 |
| H-NS | 343-357 | 8.504 |
| Nac | 40-54 | 8.340 |
| DeoR | 211-226 | 8.234 |
| AraC | 211-228 | 8.168 |
| Lrp | 196-207 | 7.993 |
| RcsB | 164-177 | 7.800 |
| UlaR | 171-190 | 7.603 |
| CRP | 57-78 | 7.417 |
| GcvA | 337-365 | 7.334 |
| PurR | 264-279 | 7.309 |
| AgaR | 180-203 | 7.246 |
| LacI | 235-255 | 7.228 |
| PhoB | 324-343 | 7.220 |
| ArgP | 198-210 | 7.215 |
| GlpR | 346-365 | 7.197 |
| OmpR | 344-363 | 6.938 |
| NtrC | 134-150 | 6.795 |
| Rob | 233-253 | 6.660 |
| MetR | 153-176 | 6.540 |
| FNR | 173-194 | 6.444 |
| DnaA | 287-295 | 6.434 |
| PspF | 186-202 | 6.417 |
| TyrR | 338-359 | 6.123 |
| CpxR | 185-199 | 6.046 |
| MetJ | 352-359 | 6.040 |
| NarL | 181-187 | 5.959 |
| NarP | 118-124 | 5.839 |
| UxuR | 175-192 | 5.630 |
| MalT | 81-90 | 5.163 |
| PhoP | 45-61 | 5.112 |