| TF name | Position | PWM scan score |
| XylR | 303-320 | 17.192 |
| H-NS | 356-370 | 10.316 |
| CysB | 341-382 | 10.204 |
| CRP | 19-40 | 10.088 |
| ArgP | 366-378 | 9.439 |
| SoxS | 291-308 | 8.798 |
| Lrp | 151-162 | 8.786 |
| GalS | 21-36 | 8.781 |
| GalR | 21-36 | 8.781 |
| NarL | 138-144 | 8.755 |
| ArcA | 320-380 | 8.570 |
| OmpR | 344-363 | 8.360 |
| NorR | 319-335 | 8.072 |
| FadR | 179-195 | 7.939 |
| RcsB | 152-165 | 7.683 |
| IdnR | 98-113 | 7.619 |
| IHF | 82-94 | 7.593 |
| PhoB | 93-112 | 7.464 |
| GntR | 343-362 | 7.280 |
| DnaA | 120-128 | 7.204 |
| Nac | 129-143 | 7.133 |
| GlpR | 9-28 | 7.104 |
| MarA | 20-40 | 7.100 |
| Mlc | 337-359 | 6.904 |
| Rob | 343-363 | 6.687 |
| AraC | 350-367 | 6.662 |
| NtrC | 290-306 | 6.589 |
| GadE | 139-158 | 6.557 |
| FNR | 82-103 | 6.557 |
| Fis | 359-379 | 6.470 |
| TorR | 337-346 | 6.222 |
| CpxR | 342-356 | 5.940 |
| ArgR | 124-139 | 5.876 |
| RhaS | 137-153 | 5.648 |
| Ada | 4-31 | 5.484 |
| UlaR | 336-355 | 5.234 |
| PurR | 230-245 | 5.083 |