| TF name | Position | PWM scan score |
| ArcA | 52-112 | 15.362 |
| MetJ | 31-38 | 11.792 |
| UlaR | 59-78 | 11.178 |
| ModE | 10-36 | 11.150 |
| PhoB | 136-155 | 10.966 |
| PspF | 67-83 | 9.954 |
| Rob | 73-93 | 9.331 |
| SoxS | 131-148 | 8.917 |
| MetR | 77-100 | 8.617 |
| OxyR | 50-94 | 8.533 |
| CytR | 57-96 | 8.527 |
| NorR | 38-54 | 8.526 |
| Nac | 23-37 | 8.406 |
| Lrp | 132-143 | 8.403 |
| MarA | 4-24 | 8.226 |
| IHF | 82-94 | 8.191 |
| MelR | 146-163 | 8.146 |
| GlpR | 44-63 | 8.101 |
| H-NS | 115-129 | 7.997 |
| CRP | 61-82 | 7.944 |
| TyrR | 17-38 | 7.700 |
| AgaR | 60-83 | 7.492 |
| NagC | 73-95 | 7.350 |
| TorR | 115-124 | 7.293 |
| Ada | 52-79 | 7.218 |
| UxuR | 68-85 | 6.896 |
| GadE | 136-155 | 6.711 |
| FNR | 73-94 | 6.618 |
| MalT | 340-349 | 6.577 |
| FruR | 64-81 | 6.522 |
| Fur | 4-18 | 6.418 |
| DnaA | 329-337 | 6.418 |
| Fis | 224-244 | 6.268 |
| NarL | 233-239 | 6.131 |
| PurR | 82-97 | 6.036 |
| OmpR | 21-40 | 5.794 |
| CpxR | 289-303 | 5.709 |
| PhoP | 305-321 | 5.703 |
| GalR | 82-97 | 5.521 |
| GalS | 82-97 | 5.521 |
| LexA | 38-57 | 5.486 |
| XylR | 150-167 | 5.315 |
| AraC | 56-73 | 5.206 |
| NarP | 351-357 | 5.098 |