| TF name | Position | PWM scan score |
| ArcA | 336-396 | 13.361 |
| ArgP | 365-377 | 13.039 |
| ArgR | 366-381 | 12.073 |
| MarA | 250-270 | 11.509 |
| MetR | 280-303 | 11.269 |
| NagC | 349-371 | 10.149 |
| Ada | 2-29 | 10.101 |
| MetJ | 381-388 | 10.091 |
| PspF | 51-67 | 9.461 |
| TyrR | 113-134 | 8.704 |
| FNR | 64-85 | 8.530 |
| SoxS | 336-353 | 8.515 |
| Fur | 367-381 | 8.036 |
| IHF | 342-354 | 7.921 |
| PhoP | 328-344 | 7.557 |
| FhlA | 345-384 | 7.520 |
| Lrp | 73-84 | 7.503 |
| NarP | 187-193 | 7.352 |
| Fis | 200-220 | 7.326 |
| MalT | 169-178 | 7.195 |
| NarL | 117-123 | 6.907 |
| UlaR | 285-304 | 6.740 |
| Nac | 56-70 | 6.333 |
| RcsB | 118-131 | 6.232 |
| GcvA | 72-100 | 6.230 |
| AgaR | 72-95 | 6.163 |
| DeoR | 237-252 | 6.029 |
| AraC | 115-132 | 6.022 |
| GalR | 369-384 | 5.977 |
| GalS | 369-384 | 5.977 |
| H-NS | 255-269 | 5.845 |
| CpxR | 369-383 | 5.749 |
| XylR | 362-379 | 5.387 |
| LacI | 208-228 | 5.015 |