| TF name | Position | PWM scan score |
| OmpR | 363-382 | 15.198 |
| Mlc | 67-89 | 14.981 |
| SoxS | 369-386 | 14.215 |
| AgaR | 354-377 | 14.072 |
| DnaA | 247-255 | 13.575 |
| ArcA | 339-399 | 12.962 |
| GadE | 244-263 | 12.224 |
| H-NS | 373-387 | 11.175 |
| GcvA | 239-267 | 9.771 |
| GntR | 240-259 | 9.599 |
| AraC | 249-266 | 9.232 |
| CysB | 55-96 | 9.145 |
| Rob | 29-49 | 8.888 |
| IHF | 175-187 | 8.731 |
| Lrp | 65-76 | 8.715 |
| MarA | 367-387 | 8.705 |
| XylR | 238-255 | 8.607 |
| NagC | 69-91 | 8.539 |
| DeoR | 273-288 | 8.513 |
| PurR | 39-54 | 8.431 |
| Nac | 181-195 | 8.301 |
| Fis | 246-266 | 8.271 |
| TorR | 188-197 | 8.245 |
| PhoB | 34-53 | 7.843 |
| CRP | 366-387 | 7.721 |
| FNR | 333-354 | 7.681 |
| GlpR | 67-86 | 7.468 |
| CytR | 31-70 | 7.451 |
| NarL | 367-373 | 7.309 |
| ArgP | 320-332 | 7.055 |
| TyrR | 235-256 | 6.919 |
| MetR | 341-364 | 6.904 |
| NtrC | 169-185 | 6.657 |
| ArgR | 171-186 | 6.340 |
| NorR | 178-194 | 6.334 |
| RhaS | 264-280 | 6.317 |
| MelR | 13-30 | 6.214 |
| MalT | 219-228 | 6.208 |
| CpxR | 148-162 | 6.143 |
| FadR | 6-22 | 6.031 |
| OxyR | 339-383 | 6.018 |
| PhoP | 187-203 | 5.798 |
| RcsB | 298-311 | 5.739 |
| Ada | 50-77 | 5.634 |
| FruR | 212-229 | 5.187 |
| LacI | 315-335 | 5.032 |