| TF name | Position | PWM scan score |
| H-NS | 154-168 | 14.926 |
| TrpR | 362-379 | 12.470 |
| ArcA | 156-216 | 12.422 |
| NagC | 141-163 | 12.417 |
| Mlc | 131-153 | 12.255 |
| MarA | 373-393 | 11.576 |
| IHF | 178-190 | 11.413 |
| CytR | 152-191 | 11.098 |
| GadE | 378-397 | 10.714 |
| CysB | 130-171 | 10.290 |
| AraC | 296-313 | 9.987 |
| IdnR | 236-251 | 9.836 |
| ArgR | 281-296 | 9.714 |
| DnaA | 333-341 | 9.659 |
| TorR | 334-343 | 9.584 |
| LacI | 325-345 | 9.544 |
| SoxS | 372-389 | 9.535 |
| Fis | 179-199 | 9.528 |
| OmpR | 141-160 | 9.399 |
| FNR | 354-375 | 9.101 |
| GntR | 370-389 | 9.087 |
| Lrp | 195-206 | 9.082 |
| NarL | 112-118 | 8.755 |
| GlpR | 256-275 | 8.629 |
| Nac | 89-103 | 8.626 |
| CRP | 132-153 | 8.435 |
| RcsB | 130-143 | 8.188 |
| ArgP | 185-197 | 7.974 |
| XylR | 255-272 | 7.931 |
| NarP | 57-63 | 7.885 |
| MalT | 169-178 | 7.033 |
| UlaR | 299-318 | 6.905 |
| NorR | 149-165 | 6.094 |
| AgaR | 365-388 | 5.927 |
| RhaS | 279-295 | 5.630 |
| CpxR | 296-310 | 5.448 |
| DeoR | 144-159 | 5.439 |
| Fur | 372-386 | 5.436 |
| PhoP | 228-244 | 5.362 |