| TF name | Position | PWM scan score |
| OmpR | 377-396 | 16.466 |
| MelR | 331-348 | 13.817 |
| FNR | 376-397 | 12.589 |
| ArcA | 172-232 | 12.298 |
| MetR | 31-54 | 11.540 |
| H-NS | 375-389 | 10.328 |
| NagC | 178-200 | 10.174 |
| GntR | 25-44 | 10.021 |
| IHF | 184-196 | 9.946 |
| Fur | 169-183 | 9.933 |
| PhoP | 189-205 | 9.561 |
| IdnR | 286-301 | 9.083 |
| Rob | 376-396 | 9.008 |
| Nac | 341-355 | 8.912 |
| Lrp | 187-198 | 8.880 |
| XylR | 375-392 | 8.811 |
| PhoB | 175-194 | 8.707 |
| MetJ | 110-117 | 8.626 |
| TyrR | 182-203 | 8.237 |
| GadE | 49-68 | 8.011 |
| UlaR | 1-20 | 8.003 |
| GcvA | 291-319 | 7.976 |
| GalR | 328-343 | 7.922 |
| GalS | 328-343 | 7.922 |
| CRP | 342-363 | 7.790 |
| CpxR | 288-302 | 7.709 |
| TrpR | 139-156 | 7.658 |
| GlpR | 147-166 | 7.594 |
| NarP | 196-202 | 7.585 |
| Fis | 217-237 | 7.530 |
| DnaA | 194-202 | 7.209 |
| AraC | 184-201 | 7.149 |
| NarL | 171-177 | 7.107 |
| Mlc | 359-381 | 6.852 |
| ArgP | 377-389 | 6.667 |
| UxuR | 188-205 | 6.573 |
| SoxS | 178-195 | 6.344 |
| CytR | 30-69 | 6.339 |
| TorR | 282-291 | 6.049 |
| RcsB | 379-392 | 6.001 |
| PurR | 318-333 | 5.544 |
| ArgR | 372-387 | 5.448 |
| FadR | 278-294 | 5.306 |
| Ada | 276-303 | 5.246 |
| DeoR | 384-399 | 5.147 |
| ModE | 256-282 | 5.139 |