| TF name | Position | PWM scan score |
| MarA | 129-149 | 14.095 |
| UxuR | 359-376 | 11.085 |
| Fis | 359-379 | 10.856 |
| MelR | 144-161 | 10.495 |
| Fur | 367-381 | 10.323 |
| Nac | 371-385 | 10.042 |
| NagC | 370-392 | 9.489 |
| H-NS | 366-380 | 9.257 |
| SoxS | 378-395 | 8.936 |
| XylR | 238-255 | 8.906 |
| MalT | 231-240 | 8.780 |
| GlpR | 369-388 | 8.448 |
| IHF | 2-14 | 8.016 |
| OmpR | 379-398 | 7.839 |
| FadR | 309-325 | 7.807 |
| NorR | 372-388 | 7.798 |
| Rob | 194-214 | 7.794 |
| PhoP | 378-394 | 7.742 |
| Lrp | 367-378 | 7.441 |
| DnaA | 247-255 | 7.252 |
| ArgP | 366-378 | 7.133 |
| TorR | 284-293 | 6.971 |
| GalS | 141-156 | 6.833 |
| GalR | 141-156 | 6.833 |
| LexA | 57-76 | 6.615 |
| NarL | 74-80 | 6.388 |
| FNR | 114-135 | 6.313 |
| AraC | 359-376 | 6.101 |
| TyrR | 236-257 | 5.904 |
| MetJ | 114-121 | 5.720 |
| CRP | 359-380 | 5.577 |
| AgaR | 366-389 | 5.307 |
| CueR | 349-367 | 5.159 |
| RhaS | 324-340 | 5.106 |