| TF name | Position | PWM scan score |
| FNR | 228-249 | 11.206 |
| IdnR | 109-124 | 10.924 |
| IHF | 6-18 | 10.291 |
| DeoR | 339-354 | 10.073 |
| Nac | 233-247 | 9.396 |
| GadE | 171-190 | 9.024 |
| GlpR | 174-193 | 8.711 |
| UlaR | 342-361 | 8.500 |
| OmpR | 228-247 | 8.409 |
| NagC | 213-235 | 8.047 |
| DnaA | 356-364 | 8.024 |
| RcsB | 242-255 | 7.861 |
| Mlc | 227-249 | 7.835 |
| MelR | 45-62 | 7.826 |
| NtrC | 269-285 | 7.637 |
| MalT | 257-266 | 7.630 |
| AraC | 7-24 | 7.566 |
| CRP | 172-193 | 7.560 |
| Fis | 355-375 | 7.460 |
| GntR | 349-368 | 7.131 |
| Lrp | 6-17 | 6.926 |
| MetR | 1-24 | 6.698 |
| SoxS | 58-75 | 6.181 |
| H-NS | 226-240 | 6.174 |
| ArgR | 360-375 | 6.171 |
| ArgP | 5-17 | 6.125 |
| NarL | 300-306 | 6.105 |
| XylR | 308-325 | 6.024 |
| TorR | 247-256 | 6.010 |
| PspF | 244-260 | 5.971 |
| GalR | 59-74 | 5.896 |
| GalS | 59-74 | 5.896 |
| NarP | 260-266 | 5.627 |
| Rob | 37-57 | 5.314 |
| MetJ | 333-340 | 5.185 |
| PhoP | 222-238 | 5.106 |
| CueR | 137-155 | 5.014 |