| TF name | Position | PWM scan score |
| UlaR | 231-250 | 16.529 |
| ArcA | 337-397 | 15.536 |
| H-NS | 16-30 | 14.926 |
| NagC | 3-25 | 12.417 |
| CytR | 14-53 | 11.881 |
| IHF | 234-246 | 11.494 |
| MetR | 295-318 | 10.849 |
| SoxS | 46-63 | 10.433 |
| MarA | 44-64 | 10.302 |
| ArgR | 288-303 | 10.230 |
| OmpR | 3-22 | 9.399 |
| Fur | 340-354 | 9.191 |
| PhoP | 38-54 | 9.013 |
| Mlc | 2-24 | 8.927 |
| Rob | 358-378 | 8.802 |
| MelR | 231-248 | 8.799 |
| TyrR | 288-309 | 8.786 |
| NtrC | 237-253 | 8.682 |
| CysB | 9-50 | 8.553 |
| Fis | 41-61 | 8.536 |
| DnaA | 245-253 | 8.503 |
| GcvA | 345-373 | 8.484 |
| Lrp | 3-14 | 8.426 |
| NarL | 354-360 | 8.190 |
| FNR | 90-111 | 8.024 |
| CRP | 346-367 | 7.980 |
| Nac | 345-359 | 7.840 |
| ArgP | 39-51 | 7.447 |
| GadE | 92-111 | 7.445 |
| PspF | 184-200 | 7.178 |
| TorR | 2-11 | 7.050 |
| IdnR | 181-196 | 6.941 |
| RcsB | 383-396 | 6.818 |
| GlpR | 314-333 | 6.528 |
| PhoB | 282-301 | 6.493 |
| GntR | 346-365 | 6.259 |
| NorR | 11-27 | 6.094 |
| DeoR | 192-207 | 6.072 |
| AraC | 341-358 | 5.723 |
| MetJ | 231-238 | 5.516 |
| PurR | 149-164 | 5.505 |
| UxuR | 266-283 | 5.188 |
| FadR | 106-122 | 5.057 |