| TF name | Position | PWM scan score |
| XylR | 217-234 | 15.729 |
| Ada | 356-383 | 12.495 |
| PhoP | 75-91 | 12.371 |
| MetJ | 219-226 | 11.073 |
| FruR | 116-133 | 10.817 |
| DnaA | 226-234 | 10.552 |
| DeoR | 172-187 | 10.308 |
| UlaR | 370-389 | 8.812 |
| Lrp | 37-48 | 8.492 |
| RhaS | 125-141 | 8.254 |
| FNR | 369-390 | 8.191 |
| OmpR | 88-107 | 7.396 |
| GadE | 106-125 | 7.382 |
| NagC | 3-25 | 7.368 |
| Rob | 118-138 | 7.254 |
| Fis | 92-112 | 7.199 |
| ArgP | 386-398 | 7.037 |
| H-NS | 303-317 | 6.767 |
| TyrR | 375-396 | 6.689 |
| AraC | 83-100 | 6.547 |
| MarA | 149-169 | 6.502 |
| MalT | 356-365 | 6.280 |
| Mlc | 375-397 | 6.207 |
| RcsB | 372-385 | 6.027 |
| LacI | 134-154 | 5.863 |
| Nac | 226-240 | 5.543 |
| NarL | 112-118 | 5.373 |
| CpxR | 377-391 | 5.354 |
| MelR | 38-55 | 5.314 |
| AgaR | 361-384 | 5.079 |
| UxuR | 120-137 | 5.051 |
| MetR | 29-52 | 5.031 |
| TorR | 295-304 | 5.029 |