| TF name | Position | PWM scan score |
| CueR | 73-91 | 12.290 |
| XylR | 319-336 | 9.921 |
| NtrC | 249-265 | 9.494 |
| NarP | 111-117 | 8.154 |
| MalT | 376-385 | 6.877 |
| NarL | 322-328 | 6.854 |
| H-NS | 227-241 | 6.600 |
| Lrp | 254-265 | 6.509 |
| FNR | 239-260 | 6.413 |
| UlaR | 224-243 | 6.207 |
| Fis | 258-278 | 6.170 |
| IHF | 209-221 | 5.564 |
| Ada | 255-282 | 5.440 |
| Rob | 138-158 | 5.183 |
| DnaA | 145-153 | 5.140 |
| Nac | 112-126 | 5.017 |