| TF name | Position | PWM scan score |
| Nac | 111-125 | 12.813 |
| TorR | 18-27 | 11.455 |
| OmpR | 42-61 | 10.883 |
| IHF | 49-61 | 10.291 |
| UlaR | 181-200 | 10.041 |
| NarP | 133-139 | 9.938 |
| NorR | 18-34 | 9.457 |
| FNR | 169-190 | 9.337 |
| CRP | 190-211 | 9.168 |
| DnaA | 333-341 | 8.868 |
| SoxS | 161-178 | 8.517 |
| Lrp | 328-339 | 8.506 |
| H-NS | 42-56 | 8.319 |
| MelR | 281-298 | 8.154 |
| XylR | 222-239 | 7.849 |
| PhoP | 371-387 | 7.848 |
| CytR | 166-205 | 7.760 |
| NarL | 343-349 | 7.577 |
| AraC | 323-340 | 7.535 |
| ModE | 164-190 | 7.416 |
| MarA | 159-179 | 7.150 |
| DeoR | 49-64 | 7.144 |
| CueR | 158-176 | 7.112 |
| Ada | 212-239 | 6.741 |
| GlpR | 180-199 | 6.357 |
| CpxR | 162-176 | 6.161 |
| Fur | 127-141 | 6.105 |
| FadR | 256-272 | 6.019 |
| Mlc | 327-349 | 5.790 |
| Fis | 164-184 | 5.602 |
| Rob | 41-61 | 5.533 |
| RcsB | 303-316 | 5.429 |
| MetJ | 2-9 | 5.336 |
| MalT | 219-228 | 5.014 |