| TF name | Position | PWM scan score |
| PhoB | 257-276 | 12.175 |
| OmpR | 295-314 | 11.490 |
| RhaS | 144-160 | 11.267 |
| Rob | 87-107 | 11.168 |
| IdnR | 262-277 | 10.068 |
| H-NS | 259-273 | 10.037 |
| Fis | 270-290 | 9.732 |
| GalS | 265-280 | 9.555 |
| GalR | 265-280 | 9.555 |
| IHF | 23-35 | 9.539 |
| ArcA | 257-317 | 9.537 |
| CueR | 46-64 | 9.514 |
| GcvA | 263-291 | 9.396 |
| FNR | 75-96 | 9.215 |
| Lrp | 26-37 | 8.868 |
| SoxS | 16-33 | 8.762 |
| NagC | 10-32 | 8.664 |
| RcsB | 342-355 | 8.491 |
| LexA | 79-98 | 8.424 |
| GlpR | 3-22 | 8.396 |
| GntR | 267-286 | 8.275 |
| FruR | 288-305 | 8.094 |
| MarA | 244-264 | 7.799 |
| PurR | 265-280 | 7.426 |
| TorR | 311-320 | 7.314 |
| XylR | 185-202 | 7.218 |
| ArgR | 354-369 | 7.167 |
| AraC | 23-40 | 6.711 |
| Nac | 99-113 | 6.486 |
| MetR | 297-320 | 6.192 |
| CpxR | 302-316 | 6.105 |
| CRP | 269-290 | 6.054 |
| MalT | 145-154 | 5.918 |
| UlaR | 65-84 | 5.821 |
| FadR | 177-193 | 5.723 |
| Mlc | 3-25 | 5.722 |
| NarL | 162-168 | 5.639 |
| NarP | 134-140 | 5.581 |
| ModE | 351-377 | 5.461 |
| DeoR | 302-317 | 5.451 |
| LacI | 68-88 | 5.268 |
| AgaR | 289-312 | 5.070 |