| TF name | Position | PWM scan score |
| DeoR | 365-380 | 14.079 |
| OmpR | 131-150 | 10.969 |
| Mlc | 280-302 | 10.691 |
| IdnR | 49-64 | 10.609 |
| TyrR | 279-300 | 10.569 |
| H-NS | 378-392 | 10.371 |
| UlaR | 166-185 | 10.032 |
| CRP | 241-262 | 9.845 |
| Nac | 161-175 | 9.509 |
| IHF | 170-182 | 9.086 |
| RcsB | 362-375 | 9.049 |
| Lrp | 277-288 | 8.690 |
| ModE | 185-211 | 8.645 |
| MarA | 132-152 | 8.332 |
| PurR | 7-22 | 8.284 |
| GalS | 7-22 | 8.269 |
| GalR | 7-22 | 8.269 |
| FruR | 372-389 | 8.154 |
| XylR | 374-391 | 7.864 |
| PspF | 227-243 | 7.848 |
| PhoB | 260-279 | 7.819 |
| CpxR | 365-379 | 7.679 |
| GlpR | 147-166 | 7.620 |
| ArgP | 143-155 | 7.354 |
| NarL | 7-13 | 7.107 |
| SoxS | 201-218 | 6.879 |
| MelR | 170-187 | 6.815 |
| TorR | 343-352 | 6.703 |
| NarP | 220-226 | 6.654 |
| DnaA | 71-79 | 6.575 |
| NtrC | 210-226 | 6.225 |
| GadE | 41-60 | 6.160 |
| FNR | 103-124 | 6.014 |
| ArcA | 252-312 | 6.000 |
| NagC | 63-85 | 5.939 |
| Fis | 12-32 | 5.896 |
| MalT | 244-253 | 5.852 |
| ArgR | 277-292 | 5.647 |
| AraC | 340-357 | 5.506 |
| PhoP | 44-60 | 5.499 |
| AgaR | 216-239 | 5.424 |
| GntR | 378-397 | 5.308 |
| MetJ | 346-353 | 5.110 |
| FadR | 295-311 | 5.061 |
| Rob | 283-303 | 5.010 |