| TF name | Position | PWM scan score |
| PhoB | 43-62 | 14.897 |
| AgaR | 339-362 | 14.487 |
| XylR | 376-393 | 12.771 |
| Nac | 385-399 | 12.551 |
| UxuR | 131-148 | 12.135 |
| MelR | 289-306 | 11.707 |
| TorR | 386-395 | 11.301 |
| CytR | 356-395 | 9.775 |
| GalR | 92-107 | 9.736 |
| GalS | 92-107 | 9.736 |
| UlaR | 198-217 | 9.042 |
| Lrp | 223-234 | 8.715 |
| Fur | 377-391 | 8.615 |
| IHF | 387-399 | 8.471 |
| RcsB | 201-214 | 8.419 |
| GlpR | 225-244 | 8.396 |
| Ada | 208-235 | 7.917 |
| ModE | 341-367 | 7.614 |
| MetR | 330-353 | 7.314 |
| DnaA | 385-393 | 7.287 |
| LexA | 120-139 | 7.225 |
| PhoP | 383-399 | 7.198 |
| CysB | 346-387 | 6.907 |
| Fis | 258-278 | 6.829 |
| PspF | 374-390 | 6.417 |
| CRP | 313-334 | 6.416 |
| LacI | 325-345 | 6.290 |
| FNR | 367-388 | 6.171 |
| H-NS | 170-184 | 6.153 |
| CpxR | 136-150 | 6.126 |
| NarL | 117-123 | 6.105 |
| MarA | 122-142 | 5.925 |
| MalT | 258-267 | 5.866 |
| FadR | 339-355 | 5.834 |
| GadE | 137-156 | 5.796 |
| FruR | 204-221 | 5.709 |
| SoxS | 68-85 | 5.615 |
| OmpR | 244-263 | 5.491 |
| Rob | 338-358 | 5.416 |
| CueR | 371-389 | 5.362 |
| ArgP | 121-133 | 5.070 |