| TF name | Position | PWM scan score |
| Ada | 158-185 | 15.776 |
| RcsB | 59-72 | 15.033 |
| AraC | 53-70 | 13.949 |
| PhoB | 54-73 | 12.658 |
| OmpR | 138-157 | 12.057 |
| FadR | 1-17 | 10.394 |
| MetJ | 53-60 | 10.318 |
| H-NS | 127-141 | 10.214 |
| SoxS | 309-326 | 10.118 |
| IHF | 196-208 | 10.042 |
| CysB | 101-142 | 10.014 |
| DeoR | 221-236 | 9.751 |
| ArgR | 367-382 | 8.954 |
| DnaA | 51-59 | 8.811 |
| Lrp | 173-184 | 8.741 |
| CytR | 117-156 | 8.578 |
| Rob | 6-26 | 8.570 |
| Fis | 120-140 | 8.536 |
| NagC | 154-176 | 8.380 |
| CpxR | 371-385 | 8.015 |
| Mlc | 120-142 | 7.944 |
| NarP | 284-290 | 7.885 |
| ArgP | 62-74 | 7.874 |
| PhoP | 370-386 | 7.860 |
| UlaR | 148-167 | 7.592 |
| IdnR | 234-249 | 7.177 |
| ArcA | 103-163 | 7.143 |
| MetR | 163-186 | 7.082 |
| Nac | 129-143 | 6.995 |
| Fur | 262-276 | 6.465 |
| PurR | 147-162 | 6.419 |
| XylR | 2-19 | 6.187 |
| FNR | 124-145 | 5.891 |
| MalT | 357-366 | 5.806 |
| NorR | 5-21 | 5.801 |
| GlpR | 372-391 | 5.785 |
| GntR | 6-25 | 5.722 |
| FruR | 280-297 | 5.646 |
| CRP | 58-79 | 5.494 |
| NarL | 317-323 | 5.346 |
| TyrR | 111-132 | 5.080 |