| TF name | Position | PWM scan score |
| FNR | 82-103 | 11.711 |
| NorR | 70-86 | 9.457 |
| Nac | 84-98 | 9.257 |
| MalT | 139-148 | 8.568 |
| TorR | 85-94 | 8.008 |
| CRP | 179-200 | 7.967 |
| AgaR | 354-377 | 7.174 |
| OxyR | 69-113 | 7.137 |
| MarA | 66-86 | 7.122 |
| RcsB | 149-162 | 7.055 |
| NarL | 1-7 | 7.041 |
| MetJ | 208-215 | 6.829 |
| IHF | 82-94 | 6.510 |
| NarP | 255-261 | 6.421 |
| PhoB | 71-90 | 6.313 |
| NtrC | 165-181 | 6.176 |
| AraC | 38-55 | 6.168 |
| Fis | 361-381 | 6.008 |
| CytR | 73-112 | 5.976 |
| OmpR | 78-97 | 5.645 |
| Lrp | 377-388 | 5.590 |
| UlaR | 346-365 | 5.544 |
| ArgR | 112-127 | 5.223 |
| XylR | 381-398 | 5.201 |
| MelR | 182-199 | 5.136 |
| GalS | 17-32 | 5.130 |
| GalR | 17-32 | 5.130 |
| H-NS | 40-54 | 5.128 |
| CpxR | 362-376 | 5.059 |