| TF name | Position | PWM scan score |
| FNR | 373-394 | 9.617 |
| ArgP | 341-353 | 8.813 |
| TorR | 178-187 | 8.649 |
| IHF | 302-314 | 8.639 |
| CysB | 245-286 | 8.484 |
| RcsB | 367-380 | 8.347 |
| DnaA | 371-379 | 8.058 |
| Fur | 342-356 | 7.718 |
| MelR | 346-363 | 7.634 |
| MarA | 101-121 | 7.384 |
| PhoB | 243-262 | 7.333 |
| Ada | 253-280 | 7.301 |
| PhoP | 367-383 | 7.271 |
| CueR | 287-305 | 7.243 |
| PspF | 375-391 | 7.236 |
| GalR | 104-119 | 7.163 |
| GalS | 104-119 | 7.163 |
| H-NS | 293-307 | 7.049 |
| AgaR | 304-327 | 7.038 |
| AraC | 342-359 | 6.926 |
| MalT | 59-68 | 6.917 |
| NarP | 285-291 | 6.524 |
| Nac | 368-382 | 6.092 |
| Lrp | 383-394 | 6.025 |
| SoxS | 103-120 | 6.015 |
| NarL | 199-205 | 5.902 |
| GlpR | 331-350 | 5.874 |
| CRP | 139-160 | 5.863 |
| DeoR | 376-391 | 5.576 |
| OmpR | 380-399 | 5.561 |
| GntR | 107-126 | 5.427 |
| Fis | 363-383 | 5.353 |
| Rob | 228-248 | 5.307 |
| NorR | 252-268 | 5.280 |
| TyrR | 167-188 | 5.100 |
| LacI | 356-376 | 5.094 |