| TF name | Position | PWM scan score |
| SoxS | 281-298 | 10.359 |
| AraC | 301-318 | 9.452 |
| NarP | 385-391 | 8.982 |
| H-NS | 283-297 | 8.837 |
| FruR | 236-253 | 8.506 |
| DeoR | 197-212 | 8.214 |
| TyrR | 12-33 | 8.027 |
| RhaS | 94-110 | 7.679 |
| CytR | 229-268 | 7.402 |
| Fis | 287-307 | 7.317 |
| ArcA | 271-331 | 6.868 |
| DnaA | 20-28 | 6.866 |
| GadE | 282-301 | 6.817 |
| CRP | 201-222 | 6.667 |
| MarA | 192-212 | 6.500 |
| FadR | 308-324 | 6.359 |
| ModE | 373-399 | 6.051 |
| OmpR | 304-323 | 6.036 |
| PhoB | 293-312 | 5.950 |
| Rob | 55-75 | 5.739 |
| ArgR | 63-78 | 5.702 |
| IHF | 373-385 | 5.691 |
| Lrp | 282-293 | 5.420 |
| AgaR | 371-394 | 5.326 |
| RcsB | 302-315 | 5.080 |
| GlpR | 337-356 | 5.042 |
| UxuR | 240-257 | 5.022 |