| TF name | Position | PWM scan score |
| Mlc | 144-166 | 11.340 |
| MarA | 92-112 | 10.911 |
| CRP | 283-304 | 10.386 |
| NarP | 30-36 | 9.938 |
| CpxR | 367-381 | 9.752 |
| Fis | 53-73 | 9.709 |
| TorR | 294-303 | 9.604 |
| H-NS | 97-111 | 9.518 |
| Lrp | 304-315 | 8.694 |
| ArgP | 190-202 | 8.494 |
| AgaR | 218-241 | 8.238 |
| LexA | 289-308 | 7.981 |
| OmpR | 163-182 | 7.729 |
| DeoR | 295-310 | 7.695 |
| Nac | 32-46 | 7.627 |
| PhoB | 76-95 | 7.585 |
| XylR | 357-374 | 7.443 |
| Ada | 213-240 | 7.338 |
| IHF | 41-53 | 7.330 |
| MelR | 120-137 | 7.317 |
| GcvA | 81-109 | 7.144 |
| UlaR | 32-51 | 7.133 |
| SoxS | 47-64 | 6.955 |
| GadE | 190-209 | 6.917 |
| NagC | 366-388 | 6.853 |
| MetJ | 311-318 | 6.810 |
| DnaA | 366-374 | 6.741 |
| IdnR | 52-67 | 6.733 |
| GntR | 44-63 | 6.584 |
| NtrC | 115-131 | 6.478 |
| CysB | 192-233 | 6.451 |
| RcsB | 133-146 | 6.325 |
| UxuR | 283-300 | 6.163 |
| MetR | 319-342 | 6.063 |
| ArcA | 18-78 | 5.970 |
| NarL | 285-291 | 5.837 |
| ArgR | 38-53 | 5.804 |
| GlpR | 144-163 | 5.653 |
| PurR | 357-372 | 5.570 |
| TyrR | 119-140 | 5.377 |
| FadR | 40-56 | 5.248 |
| PhoP | 288-304 | 5.167 |
| AraC | 299-316 | 5.011 |