| TF name | Position | PWM scan score |
| ArcA | 336-396 | 13.717 |
| MelR | 119-136 | 10.373 |
| ArgP | 210-222 | 10.173 |
| PhoB | 376-395 | 9.491 |
| ArgR | 252-267 | 9.374 |
| RhaS | 367-383 | 9.326 |
| RcsB | 18-31 | 8.936 |
| SoxS | 236-253 | 8.573 |
| Lrp | 357-368 | 8.489 |
| MalT | 265-274 | 8.136 |
| OxyR | 297-341 | 7.747 |
| GlpR | 120-139 | 7.745 |
| Nac | 291-305 | 7.559 |
| DnaA | 276-284 | 7.188 |
| CpxR | 36-50 | 7.127 |
| DeoR | 329-344 | 6.854 |
| MarA | 234-254 | 6.649 |
| FruR | 45-62 | 6.636 |
| NarP | 65-71 | 6.629 |
| AgaR | 267-290 | 6.356 |
| Fis | 328-348 | 6.278 |
| IdnR | 24-39 | 6.101 |
| NarL | 177-183 | 5.876 |
| TorR | 273-282 | 5.759 |
| NorR | 27-43 | 5.710 |
| Fur | 363-377 | 5.468 |
| FadR | 117-133 | 5.417 |
| MetJ | 87-94 | 5.412 |
| FNR | 19-40 | 5.341 |
| CueR | 105-123 | 5.337 |
| H-NS | 215-229 | 5.248 |
| XylR | 63-80 | 5.168 |
| OmpR | 15-34 | 5.164 |