| TF name | Position | PWM scan score |
| Mlc | 118-140 | 16.880 |
| ArcA | 115-175 | 15.881 |
| CysB | 128-169 | 14.661 |
| Fur | 135-149 | 13.398 |
| UlaR | 131-150 | 11.198 |
| PhoP | 356-372 | 10.955 |
| PspF | 153-169 | 10.483 |
| MetR | 151-174 | 10.084 |
| RcsB | 19-32 | 9.206 |
| XylR | 155-172 | 9.039 |
| OmpR | 347-366 | 9.033 |
| DnaA | 308-316 | 8.868 |
| CytR | 131-170 | 8.801 |
| UxuR | 154-171 | 8.628 |
| Lrp | 355-366 | 8.450 |
| TorR | 46-55 | 8.245 |
| H-NS | 358-372 | 8.137 |
| AgaR | 5-28 | 7.928 |
| NarP | 128-134 | 7.585 |
| IHF | 157-169 | 7.353 |
| Fis | 298-318 | 7.294 |
| ArgP | 134-146 | 7.133 |
| CpxR | 137-151 | 7.127 |
| MelR | 196-213 | 6.941 |
| AraC | 212-229 | 6.604 |
| FNR | 121-142 | 6.546 |
| GntR | 332-351 | 6.535 |
| FruR | 199-216 | 6.512 |
| TyrR | 316-337 | 6.431 |
| DcuR | 121-175 | 6.378 |
| GcvA | 343-371 | 6.317 |
| NagC | 147-169 | 6.301 |
| NtrC | 366-382 | 6.261 |
| IdnR | 19-34 | 6.180 |
| NarL | 331-337 | 6.065 |
| GlpR | 235-254 | 5.868 |
| PhoB | 196-215 | 5.836 |
| NorR | 56-72 | 5.722 |
| CRP | 334-355 | 5.605 |
| Nac | 149-163 | 5.428 |
| CueR | 36-54 | 5.416 |
| LexA | 43-62 | 5.343 |
| Rob | 320-340 | 5.197 |
| ArgR | 163-178 | 5.154 |
| ModE | 261-287 | 5.087 |
| MalT | 38-47 | 5.082 |