| TF name | Position | PWM scan score |
| TorR | 237-246 | 9.198 |
| DnaA | 3-11 | 8.669 |
| CpxR | 320-334 | 8.210 |
| FruR | 230-247 | 7.970 |
| RcsB | 314-327 | 7.953 |
| MalT | 298-307 | 7.671 |
| NarL | 257-263 | 6.945 |
| IdnR | 373-388 | 6.941 |
| ArgP | 371-383 | 6.567 |
| LacI | 101-121 | 5.685 |
| GntR | 78-97 | 5.660 |
| IHF | 363-375 | 5.255 |
| SoxS | 292-309 | 5.159 |
| NarP | 262-268 | 5.098 |