| TF name | Position | PWM scan score |
| CytR | 343-382 | 21.489 |
| TyrR | 187-208 | 12.895 |
| Mlc | 261-283 | 10.479 |
| ArgR | 382-397 | 10.382 |
| GlpR | 195-214 | 10.173 |
| RcsB | 31-44 | 9.723 |
| PhoP | 96-112 | 9.635 |
| CueR | 264-282 | 9.341 |
| Lrp | 259-270 | 8.156 |
| NarP | 129-135 | 8.118 |
| IHF | 369-381 | 7.843 |
| H-NS | 159-173 | 7.756 |
| FNR | 199-220 | 7.435 |
| Nac | 357-371 | 7.403 |
| Ada | 181-208 | 7.297 |
| ArcA | 178-238 | 7.219 |
| MarA | 373-393 | 7.186 |
| IdnR | 272-287 | 7.177 |
| CpxR | 317-331 | 7.135 |
| PhoB | 362-381 | 7.128 |
| NagC | 358-380 | 6.818 |
| OmpR | 358-377 | 6.729 |
| Rob | 298-318 | 6.629 |
| DeoR | 74-89 | 6.601 |
| NarL | 371-377 | 6.515 |
| TorR | 349-358 | 6.358 |
| FadR | 37-53 | 6.293 |
| PurR | 275-290 | 6.203 |
| Fis | 360-380 | 6.137 |
| UlaR | 364-383 | 6.086 |
| MetJ | 318-325 | 5.910 |
| CRP | 262-283 | 5.621 |
| ArgP | 367-379 | 5.304 |
| MetR | 270-293 | 5.287 |
| AraC | 256-273 | 5.074 |
| XylR | 368-385 | 5.051 |