| TF name | Position | PWM scan score |
| Mlc | 373-395 | 12.113 |
| ArgP | 373-385 | 11.708 |
| TorR | 374-383 | 10.913 |
| AraC | 286-303 | 10.574 |
| OmpR | 292-311 | 10.523 |
| FadR | 155-171 | 8.954 |
| Fur | 362-376 | 8.598 |
| FNR | 255-276 | 8.251 |
| DnaA | 373-381 | 8.058 |
| Lrp | 117-128 | 7.930 |
| RhaS | 139-155 | 7.301 |
| GntR | 250-269 | 7.266 |
| H-NS | 83-97 | 7.185 |
| CRP | 297-318 | 6.582 |
| IHF | 363-375 | 6.369 |
| NorR | 346-362 | 6.073 |
| MetJ | 365-372 | 6.013 |
| ArcA | 293-353 | 5.848 |
| NarL | 19-25 | 5.740 |
| NtrC | 289-305 | 5.646 |
| NarP | 28-34 | 5.627 |
| SoxS | 382-399 | 5.560 |
| Rob | 366-386 | 5.137 |
| Nac | 172-186 | 5.022 |