| TF name | Position | PWM scan score |
| ArcA | 31-91 | 13.997 |
| ArgR | 216-231 | 11.843 |
| TorR | 341-350 | 11.662 |
| PspF | 125-141 | 10.838 |
| RcsB | 66-79 | 10.166 |
| H-NS | 55-69 | 9.736 |
| Nac | 195-209 | 9.052 |
| Rob | 53-73 | 8.987 |
| OmpR | 55-74 | 8.694 |
| MetR | 77-100 | 8.686 |
| IHF | 220-232 | 8.500 |
| OxyR | 215-259 | 7.772 |
| Lrp | 29-40 | 7.599 |
| ModE | 44-70 | 7.531 |
| GadE | 75-94 | 7.194 |
| PurR | 106-121 | 7.170 |
| NarL | 127-133 | 7.080 |
| UlaR | 247-266 | 7.061 |
| GcvA | 50-78 | 6.986 |
| CpxR | 247-261 | 6.802 |
| AraC | 157-174 | 6.462 |
| PhoB | 373-392 | 6.458 |
| FNR | 29-50 | 6.314 |
| Fis | 339-359 | 6.308 |
| NorR | 334-350 | 6.120 |
| DeoR | 73-88 | 5.953 |
| ArgP | 195-207 | 5.650 |
| AgaR | 212-235 | 5.636 |
| GntR | 64-83 | 5.534 |
| DnaA | 340-348 | 5.436 |
| NagC | 235-257 | 5.424 |
| TyrR | 51-72 | 5.392 |
| FruR | 380-397 | 5.120 |