| TF name | Position | PWM scan score |
| RcsB | 149-162 | 15.288 |
| Mlc | 256-278 | 12.050 |
| Ada | 194-221 | 11.639 |
| PurR | 77-92 | 10.814 |
| GntR | 80-99 | 10.394 |
| GcvA | 269-297 | 10.167 |
| Lrp | 214-225 | 8.482 |
| CueR | 231-249 | 8.410 |
| SoxS | 170-187 | 8.368 |
| GalS | 134-149 | 8.194 |
| GalR | 134-149 | 8.194 |
| Nac | 294-308 | 8.133 |
| AraC | 268-285 | 7.643 |
| Fis | 86-106 | 7.401 |
| H-NS | 97-111 | 7.349 |
| NagC | 213-235 | 7.339 |
| ArgP | 96-108 | 7.059 |
| PhoB | 140-159 | 6.992 |
| Fur | 98-112 | 6.921 |
| Rob | 262-282 | 6.874 |
| MelR | 351-368 | 6.832 |
| FadR | 45-61 | 6.829 |
| TorR | 72-81 | 6.703 |
| NarL | 269-275 | 6.678 |
| FruR | 225-242 | 6.623 |
| MalT | 35-44 | 6.522 |
| MarA | 140-160 | 6.329 |
| DnaA | 234-242 | 6.125 |
| OmpR | 268-287 | 6.121 |
| IHF | 362-374 | 6.027 |
| ArgR | 270-285 | 6.000 |
| GadE | 266-285 | 5.809 |
| XylR | 211-228 | 5.792 |
| TyrR | 221-242 | 5.768 |
| ArcA | 228-288 | 5.289 |
| RhaS | 8-24 | 5.184 |