| TF name | Position | PWM scan score |
| ArcA | 319-379 | 10.487 |
| GlpR | 41-60 | 9.773 |
| MarA | 16-36 | 8.700 |
| AgaR | 102-125 | 8.474 |
| CueR | 299-317 | 8.236 |
| MetR | 317-340 | 8.220 |
| H-NS | 38-52 | 7.988 |
| GntR | 95-114 | 7.831 |
| NarL | 262-268 | 7.740 |
| PhoP | 312-328 | 7.173 |
| Nac | 330-344 | 7.082 |
| IHF | 322-334 | 7.081 |
| Fis | 199-219 | 6.946 |
| TyrR | 253-274 | 6.944 |
| Ada | 231-258 | 6.805 |
| Lrp | 347-358 | 6.390 |
| MetJ | 304-311 | 6.074 |
| CpxR | 109-123 | 5.955 |
| PurR | 100-115 | 5.899 |
| DnaA | 7-15 | 5.860 |
| TorR | 84-93 | 5.851 |
| RcsB | 326-339 | 5.599 |
| ArgP | 48-60 | 5.599 |
| ModE | 109-135 | 5.558 |
| AraC | 240-257 | 5.455 |
| GadE | 309-328 | 5.330 |
| PhoB | 27-46 | 5.311 |
| DeoR | 340-355 | 5.260 |
| CRP | 5-26 | 5.253 |
| IdnR | 8-23 | 5.178 |
| RhaS | 175-191 | 5.022 |