| TF name | Position | PWM scan score |
| PhoB | 179-198 | 13.205 |
| DnaA | 356-364 | 9.831 |
| Fis | 377-397 | 8.940 |
| CRP | 337-358 | 8.850 |
| Mlc | 370-392 | 8.024 |
| MetR | 374-397 | 7.903 |
| Nac | 353-367 | 7.544 |
| GadE | 109-128 | 7.135 |
| FNR | 340-361 | 6.968 |
| H-NS | 385-399 | 6.943 |
| IdnR | 184-199 | 6.862 |
| Lrp | 351-362 | 6.803 |
| CueR | 12-30 | 6.789 |
| MetJ | 29-36 | 6.783 |
| NtrC | 381-397 | 6.763 |
| MarA | 362-382 | 6.721 |
| PhoP | 22-38 | 6.542 |
| ArgP | 19-31 | 6.511 |
| RhaS | 287-303 | 6.404 |
| TorR | 357-366 | 6.394 |
| RcsB | 333-346 | 6.268 |
| PurR | 135-150 | 5.889 |
| SoxS | 155-172 | 5.749 |
| GlpR | 73-92 | 5.749 |
| FadR | 69-85 | 5.565 |
| DeoR | 373-388 | 5.406 |
| GcvA | 14-42 | 5.367 |
| IHF | 23-35 | 5.308 |
| UxuR | 154-171 | 5.153 |
| MalT | 188-197 | 5.130 |
| CpxR | 356-370 | 5.112 |
| XylR | 30-47 | 5.081 |