| TF name | Position | PWM scan score |
| GadE | 309-328 | 15.187 |
| ArcA | 166-226 | 13.528 |
| OmpR | 358-377 | 13.072 |
| MetR | 278-301 | 13.059 |
| FNR | 361-382 | 12.974 |
| NagC | 182-204 | 12.049 |
| TyrR | 220-241 | 11.779 |
| MarA | 248-268 | 10.971 |
| AgaR | 169-192 | 10.321 |
| Mlc | 362-384 | 10.125 |
| Nac | 278-292 | 10.048 |
| CytR | 183-222 | 9.709 |
| Fis | 303-323 | 9.447 |
| MetJ | 303-310 | 9.336 |
| TorR | 325-334 | 9.277 |
| NarP | 105-111 | 8.911 |
| H-NS | 369-383 | 8.822 |
| SoxS | 250-267 | 8.750 |
| GcvA | 173-201 | 8.718 |
| PspF | 170-186 | 8.708 |
| Lrp | 372-383 | 8.397 |
| PhoB | 192-211 | 8.349 |
| UlaR | 279-298 | 8.301 |
| NarL | 126-132 | 8.169 |
| FruR | 318-335 | 8.092 |
| Fur | 383-397 | 7.876 |
| CRP | 358-379 | 7.852 |
| AraC | 326-343 | 7.793 |
| DcuR | 187-241 | 7.607 |
| LacI | 344-364 | 7.485 |
| ArgP | 308-320 | 7.432 |
| MalT | 5-14 | 7.174 |
| Rob | 320-340 | 6.890 |
| IHF | 317-329 | 6.787 |
| ModE | 213-239 | 6.578 |
| ArgR | 353-368 | 6.195 |
| DnaA | 301-309 | 6.189 |
| RhaS | 125-141 | 6.077 |
| MelR | 339-356 | 6.001 |
| CueR | 247-265 | 5.858 |
| NtrC | 355-371 | 5.440 |
| CpxR | 232-246 | 5.319 |
| CysB | 166-207 | 5.187 |
| GalR | 85-100 | 5.178 |
| GalS | 85-100 | 5.178 |