| TF name | Position | PWM scan score |
| FNR | 325-346 | 11.484 |
| AraC | 203-220 | 10.861 |
| GlpR | 108-127 | 9.993 |
| XylR | 334-351 | 9.914 |
| Lrp | 337-348 | 8.637 |
| PurR | 335-350 | 8.619 |
| IHF | 316-328 | 8.212 |
| Nac | 306-320 | 7.946 |
| FadR | 248-264 | 7.813 |
| PhoP | 63-79 | 7.671 |
| H-NS | 382-396 | 7.574 |
| GadE | 66-85 | 7.250 |
| MetJ | 56-63 | 7.217 |
| DnaA | 386-394 | 7.188 |
| TorR | 324-333 | 7.015 |
| UlaR | 328-347 | 7.007 |
| LexA | 282-301 | 6.442 |
| RcsB | 338-351 | 6.213 |
| CytR | 283-322 | 6.172 |
| ArcA | 283-343 | 6.045 |
| MalT | 61-70 | 5.971 |
| GalR | 335-350 | 5.794 |
| GalS | 335-350 | 5.794 |
| NarP | 96-102 | 5.602 |
| SoxS | 303-320 | 5.381 |
| NarL | 49-55 | 5.210 |
| Fis | 331-351 | 5.174 |