| TF name | Position | PWM scan score |
| PhoP | 288-304 | 9.888 |
| CueR | 192-210 | 9.522 |
| IHF | 290-302 | 9.233 |
| ArgP | 385-397 | 9.174 |
| CRP | 300-321 | 9.087 |
| Lrp | 295-306 | 8.617 |
| DnaA | 300-308 | 8.482 |
| Fis | 379-399 | 8.410 |
| UxuR | 364-381 | 7.540 |
| RhaS | 322-338 | 7.397 |
| NtrC | 294-310 | 7.386 |
| IdnR | 364-379 | 7.177 |
| GlpR | 300-319 | 6.733 |
| Nac | 94-108 | 6.522 |
| MalT | 118-127 | 6.452 |
| TorR | 297-306 | 6.394 |
| CpxR | 369-383 | 6.356 |
| FNR | 52-73 | 6.230 |
| NarP | 329-335 | 6.076 |
| NarL | 211-217 | 5.740 |
| ModE | 123-149 | 5.702 |
| H-NS | 297-311 | 5.518 |
| MelR | 144-161 | 5.513 |
| CysB | 357-398 | 5.372 |
| ArgR | 58-73 | 5.261 |
| GntR | 295-314 | 5.099 |