| TF name | Position | PWM scan score |
| GlpR | 179-198 | 14.698 |
| AgaR | 144-167 | 9.928 |
| H-NS | 362-376 | 9.775 |
| UlaR | 262-281 | 9.646 |
| NarP | 6-12 | 8.982 |
| Fis | 110-130 | 8.976 |
| CRP | 336-357 | 8.769 |
| AraC | 340-357 | 8.742 |
| ArgR | 342-357 | 8.705 |
| GcvA | 345-373 | 8.584 |
| Lrp | 342-353 | 7.996 |
| PurR | 141-156 | 7.818 |
| ModE | 339-365 | 7.769 |
| SoxS | 182-199 | 7.662 |
| LacI | 335-355 | 7.311 |
| IHF | 190-202 | 7.249 |
| MalT | 81-90 | 6.932 |
| GalS | 141-156 | 6.698 |
| GalR | 141-156 | 6.698 |
| NarL | 275-281 | 6.560 |
| OmpR | 333-352 | 6.340 |
| RcsB | 172-185 | 6.289 |
| MarA | 53-73 | 5.966 |
| MetR | 244-267 | 5.914 |
| DnaA | 179-187 | 5.860 |
| UxuR | 135-152 | 5.543 |
| PhoB | 335-354 | 5.497 |
| Mlc | 174-196 | 5.460 |
| Ada | 241-268 | 5.203 |
| CpxR | 264-278 | 5.167 |
| TorR | 258-267 | 5.031 |