| TF name | Position | PWM scan score |
| H-NS | 265-279 | 11.519 |
| NorR | 162-178 | 10.921 |
| OmpR | 246-265 | 10.665 |
| MelR | 356-373 | 10.229 |
| ArcA | 339-399 | 9.496 |
| IHF | 384-396 | 9.484 |
| UxuR | 47-64 | 9.244 |
| DeoR | 255-270 | 8.535 |
| AraC | 340-357 | 8.438 |
| MetR | 118-141 | 8.331 |
| NagC | 366-388 | 8.318 |
| CRP | 262-283 | 8.067 |
| CueR | 169-187 | 8.043 |
| Rob | 160-180 | 8.038 |
| RcsB | 343-356 | 8.029 |
| NarP | 86-92 | 8.025 |
| FNR | 92-113 | 7.917 |
| LacI | 347-367 | 7.914 |
| Nac | 286-300 | 7.741 |
| MalT | 208-217 | 7.697 |
| Fis | 120-140 | 7.577 |
| Lrp | 147-158 | 7.464 |
| Mlc | 98-120 | 7.374 |
| MetJ | 141-148 | 7.138 |
| PhoP | 113-129 | 6.915 |
| PurR | 180-195 | 6.753 |
| CpxR | 149-163 | 6.688 |
| ArgR | 255-270 | 6.631 |
| PspF | 377-393 | 6.463 |
| DnaA | 24-32 | 6.433 |
| SoxS | 162-179 | 6.401 |
| GcvA | 88-116 | 6.392 |
| UlaR | 61-80 | 6.363 |
| NarL | 238-244 | 6.331 |
| TyrR | 159-180 | 6.322 |
| FadR | 33-49 | 6.228 |
| GalR | 32-47 | 6.160 |
| GalS | 32-47 | 6.160 |
| ArgP | 170-182 | 5.752 |
| AgaR | 281-304 | 5.316 |
| CytR | 142-181 | 5.300 |
| PhoB | 373-392 | 5.199 |
| TorR | 189-198 | 5.065 |