| TF name | Position | PWM scan score |
| Fur | 281-295 | 16.151 |
| OmpR | 134-153 | 12.948 |
| ArcA | 308-368 | 11.771 |
| NagC | 69-91 | 11.134 |
| IHF | 276-288 | 10.983 |
| H-NS | 133-147 | 10.714 |
| Fis | 281-301 | 10.491 |
| XylR | 283-300 | 10.300 |
| IdnR | 126-141 | 10.159 |
| CRP | 284-305 | 10.135 |
| AgaR | 268-291 | 9.703 |
| Ada | 50-77 | 9.667 |
| RcsB | 200-213 | 9.651 |
| MetJ | 235-242 | 9.599 |
| Nac | 300-314 | 9.578 |
| Lrp | 65-76 | 9.453 |
| MelR | 125-142 | 9.166 |
| DeoR | 308-323 | 8.904 |
| ArgR | 273-288 | 8.575 |
| PurR | 89-104 | 8.408 |
| SoxS | 347-364 | 7.962 |
| PhoP | 113-129 | 7.873 |
| MarA | 212-232 | 7.844 |
| Mlc | 67-89 | 7.267 |
| GntR | 15-34 | 7.066 |
| MetR | 168-191 | 7.013 |
| TyrR | 37-58 | 6.632 |
| DnaA | 114-122 | 6.433 |
| GlpR | 328-347 | 6.329 |
| UlaR | 279-298 | 6.316 |
| NarL | 65-71 | 6.105 |
| NorR | 286-302 | 5.813 |
| FNR | 190-211 | 5.747 |
| LacI | 94-114 | 5.702 |
| MalT | 36-45 | 5.479 |
| PspF | 122-138 | 5.474 |
| FhlA | 252-291 | 5.152 |