| TF name | Position | PWM scan score |
| PhoP | 370-386 | 9.014 |
| Fis | 358-378 | 8.792 |
| PhoB | 368-387 | 8.689 |
| CRP | 126-147 | 8.626 |
| IHF | 368-380 | 8.435 |
| MarA | 125-145 | 8.010 |
| AraC | 226-243 | 7.959 |
| AgaR | 206-229 | 7.702 |
| SoxS | 370-387 | 7.697 |
| DnaA | 213-221 | 7.376 |
| LacI | 33-53 | 7.240 |
| H-NS | 125-139 | 6.915 |
| GalS | 130-145 | 6.396 |
| GalR | 130-145 | 6.396 |
| FadR | 133-149 | 6.337 |
| Rob | 206-226 | 6.334 |
| NarL | 168-174 | 6.332 |
| CueR | 187-205 | 6.015 |
| TorR | 253-262 | 6.010 |
| Lrp | 132-143 | 5.995 |
| MetJ | 21-28 | 5.973 |
| MalT | 236-245 | 5.764 |
| ModE | 215-241 | 5.444 |
| RhaS | 312-328 | 5.341 |
| OmpR | 366-385 | 5.334 |
| XylR | 204-221 | 5.205 |
| FhlA | 334-373 | 5.045 |