| TF name | Position | PWM scan score |
| CpxR | 368-382 | 10.156 |
| Nac | 218-232 | 9.895 |
| PspF | 359-375 | 9.465 |
| SoxS | 281-298 | 9.103 |
| ArgP | 289-301 | 8.786 |
| MetJ | 153-160 | 8.612 |
| ArcA | 251-311 | 8.319 |
| CRP | 268-289 | 7.959 |
| DeoR | 368-383 | 7.942 |
| XylR | 215-232 | 7.621 |
| Fis | 219-239 | 7.494 |
| OmpR | 377-396 | 6.997 |
| AgaR | 353-376 | 6.974 |
| IHF | 169-181 | 6.946 |
| Mlc | 365-387 | 6.946 |
| AraC | 299-316 | 6.722 |
| UlaR | 266-285 | 6.677 |
| CytR | 194-233 | 6.576 |
| MelR | 258-275 | 6.559 |
| NarP | 308-314 | 6.524 |
| NarL | 46-52 | 6.467 |
| FruR | 193-210 | 6.423 |
| TorR | 262-271 | 6.366 |
| H-NS | 278-292 | 6.290 |
| DnaA | 208-216 | 6.246 |
| Lrp | 263-274 | 6.094 |
| RcsB | 27-40 | 5.943 |
| ModE | 356-382 | 5.805 |
| GlpR | 155-174 | 5.358 |
| Rob | 97-117 | 5.166 |
| GadE | 220-239 | 5.029 |
| FNR | 15-36 | 5.023 |