| TF name | Position | PWM scan score |
| H-NS | 226-240 | 11.622 |
| Nac | 312-326 | 10.591 |
| NtrC | 364-380 | 9.290 |
| GlpR | 81-100 | 9.281 |
| MetJ | 194-201 | 8.617 |
| IHF | 16-28 | 8.347 |
| FNR | 310-331 | 7.899 |
| AraC | 257-274 | 7.818 |
| MalT | 242-251 | 7.794 |
| NorR | 169-185 | 7.686 |
| RhaS | 287-303 | 6.768 |
| GalR | 252-267 | 6.358 |
| GalS | 252-267 | 6.358 |
| DnaA | 90-98 | 6.356 |
| FadR | 11-27 | 6.155 |
| ArgP | 57-69 | 6.032 |
| CRP | 307-328 | 5.882 |
| ModE | 110-136 | 5.641 |
| PhoB | 215-234 | 5.576 |
| PhoP | 306-322 | 5.558 |
| LacI | 240-260 | 5.413 |
| NarL | 372-378 | 5.405 |
| Rob | 224-244 | 5.300 |
| Fis | 313-333 | 5.090 |
| NarP | 269-275 | 5.073 |