| TF name | Position | PWM scan score |
| OmpR | 190-209 | 12.763 |
| IdnR | 198-213 | 11.544 |
| NagC | 259-281 | 11.457 |
| CysB | 255-296 | 11.213 |
| ArcA | 179-239 | 10.600 |
| CytR | 256-295 | 10.505 |
| RcsB | 267-280 | 10.321 |
| PhoP | 120-136 | 10.064 |
| GlpR | 132-151 | 9.973 |
| PspF | 180-196 | 9.887 |
| AraC | 116-133 | 9.798 |
| GntR | 310-329 | 9.473 |
| CRP | 260-281 | 9.161 |
| ArgR | 118-133 | 8.982 |
| FNR | 19-40 | 8.910 |
| AgaR | 16-39 | 8.840 |
| UlaR | 122-141 | 8.702 |
| GadE | 259-278 | 8.495 |
| H-NS | 205-219 | 8.450 |
| PurR | 187-202 | 8.401 |
| DnaA | 114-122 | 8.332 |
| PhoB | 85-104 | 8.212 |
| ArgP | 93-105 | 7.967 |
| Rob | 278-298 | 7.904 |
| Fis | 133-153 | 7.825 |
| Fur | 23-37 | 7.744 |
| DcuR | 242-296 | 7.715 |
| LacI | 79-99 | 7.642 |
| OxyR | 219-263 | 7.547 |
| Nac | 259-273 | 7.429 |
| IHF | 213-225 | 7.337 |
| MetJ | 276-283 | 7.240 |
| NarP | 29-35 | 7.162 |
| Mlc | 126-148 | 7.142 |
| NarL | 117-123 | 7.107 |
| GcvA | 249-277 | 7.026 |
| Lrp | 188-199 | 6.893 |
| MelR | 121-138 | 6.757 |
| NorR | 91-107 | 6.732 |
| TyrR | 114-135 | 6.608 |
| ModE | 115-141 | 6.054 |
| TorR | 22-31 | 5.715 |
| SoxS | 128-145 | 5.576 |
| MarA | 161-181 | 5.143 |
| DeoR | 138-153 | 5.131 |
| Ada | 242-269 | 5.130 |