| TF name | Position | PWM scan score |
| AraC | 249-266 | 11.518 |
| OmpR | 255-274 | 11.459 |
| GcvA | 189-217 | 10.655 |
| CpxR | 321-335 | 10.225 |
| MelR | 91-108 | 10.098 |
| Fis | 366-386 | 9.779 |
| ModE | 349-375 | 9.666 |
| GadE | 369-388 | 9.396 |
| SoxS | 86-103 | 9.386 |
| Lrp | 30-41 | 9.363 |
| ArcA | 57-117 | 9.237 |
| UxuR | 14-31 | 9.211 |
| IHF | 164-176 | 8.931 |
| DnaA | 128-136 | 8.763 |
| Nac | 286-300 | 8.718 |
| FNR | 110-131 | 8.593 |
| PhoB | 337-356 | 8.523 |
| PhoP | 185-201 | 8.522 |
| PspF | 266-282 | 8.468 |
| Rob | 368-388 | 8.386 |
| CRP | 317-338 | 7.800 |
| GalS | 331-346 | 7.757 |
| GalR | 331-346 | 7.757 |
| NarL | 7-13 | 7.336 |
| H-NS | 33-47 | 7.313 |
| XylR | 73-90 | 7.166 |
| ArgP | 334-346 | 6.968 |
| RcsB | 267-280 | 6.362 |
| GlpR | 348-367 | 6.249 |
| IdnR | 250-265 | 6.180 |
| ArgR | 87-102 | 6.100 |
| NagC | 34-56 | 6.061 |
| NtrC | 18-34 | 5.779 |
| FhlA | 167-206 | 5.738 |
| DeoR | 321-336 | 5.542 |
| RhaS | 104-120 | 5.498 |
| CytR | 11-50 | 5.322 |
| FadR | 380-396 | 5.086 |
| CysB | 93-134 | 5.018 |