| TF name | Position | PWM scan score |
| ArcA | 243-303 | 18.062 |
| MelR | 132-149 | 15.805 |
| MetR | 189-212 | 15.511 |
| Ada | 211-238 | 14.774 |
| FhlA | 289-328 | 12.957 |
| RcsB | 198-211 | 12.678 |
| AgaR | 59-82 | 12.080 |
| CpxR | 276-290 | 11.097 |
| GadE | 304-323 | 10.587 |
| CytR | 120-159 | 10.379 |
| CysB | 183-224 | 9.995 |
| Nac | 154-168 | 9.945 |
| DcuR | 183-237 | 9.622 |
| IHF | 223-235 | 9.538 |
| DnaA | 294-302 | 9.352 |
| GcvA | 26-54 | 9.321 |
| FNR | 74-95 | 9.114 |
| Lrp | 197-208 | 9.019 |
| ArgP | 75-87 | 8.864 |
| H-NS | 226-240 | 8.834 |
| CRP | 155-176 | 8.608 |
| PhoB | 323-342 | 8.365 |
| SoxS | 128-145 | 8.299 |
| NarP | 304-310 | 8.118 |
| UxuR | 24-41 | 7.871 |
| NagC | 187-209 | 7.816 |
| DeoR | 357-372 | 7.561 |
| OmpR | 41-60 | 7.523 |
| FadR | 47-63 | 7.488 |
| NorR | 382-398 | 7.095 |
| XylR | 263-280 | 6.811 |
| NarL | 258-264 | 6.744 |
| IdnR | 234-249 | 6.733 |
| PurR | 195-210 | 6.586 |
| ArgR | 138-153 | 6.421 |
| GlpR | 223-242 | 6.380 |
| MarA | 263-283 | 6.373 |
| UlaR | 256-275 | 6.233 |
| TorR | 295-304 | 5.837 |
| TyrR | 377-398 | 5.676 |
| CueR | 207-225 | 5.634 |
| Mlc | 243-265 | 5.567 |
| PspF | 176-192 | 5.532 |
| MalT | 236-245 | 5.479 |
| Fis | 190-210 | 5.405 |
| AraC | 328-345 | 5.350 |