| TF name | Position | PWM scan score |
| OmpR | 5-24 | 15.965 |
| Rob | 93-113 | 13.167 |
| NagC | 87-109 | 13.149 |
| GntR | 41-60 | 12.981 |
| RcsB | 120-133 | 12.670 |
| Nac | 167-181 | 11.887 |
| ArcA | 61-121 | 11.713 |
| TyrR | 78-99 | 10.910 |
| GcvA | 16-44 | 10.576 |
| PhoB | 6-25 | 10.358 |
| H-NS | 86-100 | 10.289 |
| MarA | 79-99 | 9.947 |
| ArgR | 13-28 | 9.288 |
| GadE | 205-224 | 9.164 |
| GlpR | 207-226 | 9.111 |
| Fis | 168-188 | 8.972 |
| TorR | 234-243 | 8.900 |
| FNR | 201-222 | 8.607 |
| CRP | 114-135 | 8.404 |
| ModE | 134-160 | 8.353 |
| IHF | 57-69 | 8.324 |
| PspF | 142-158 | 8.246 |
| ArgP | 209-221 | 8.052 |
| Fur | 320-334 | 7.978 |
| GalR | 326-341 | 7.864 |
| GalS | 326-341 | 7.864 |
| Ada | 41-68 | 7.861 |
| Lrp | 329-340 | 7.744 |
| IdnR | 157-172 | 7.631 |
| PurR | 326-341 | 7.460 |
| SoxS | 201-218 | 7.433 |
| Mlc | 333-355 | 7.195 |
| XylR | 246-263 | 7.188 |
| PhoP | 1-17 | 7.027 |
| DeoR | 211-226 | 6.903 |
| AgaR | 14-37 | 6.819 |
| DnaA | 195-203 | 6.709 |
| NarP | 378-384 | 6.558 |
| MetR | 9-32 | 6.504 |
| FadR | 225-241 | 6.352 |
| MalT | 47-56 | 5.866 |
| MetJ | 128-135 | 5.118 |
| UlaR | 242-261 | 5.089 |