| TF name | Position | PWM scan score |
| ArgR | 367-382 | 10.868 |
| PurR | 306-321 | 8.606 |
| DnaA | 77-85 | 8.238 |
| NarP | 231-237 | 7.955 |
| CRP | 95-116 | 7.716 |
| MelR | 378-395 | 7.152 |
| FNR | 27-48 | 7.025 |
| Lrp | 109-120 | 7.013 |
| RhaS | 52-68 | 6.951 |
| TorR | 30-39 | 6.838 |
| GadE | 374-393 | 6.780 |
| NarL | 47-53 | 6.723 |
| DeoR | 198-213 | 6.681 |
| PspF | 272-288 | 6.417 |
| ArgP | 107-119 | 6.078 |
| GalR | 48-63 | 5.821 |
| GalS | 48-63 | 5.821 |
| CysB | 88-129 | 5.783 |
| MalT | 92-101 | 5.726 |
| XylR | 65-82 | 5.623 |
| MetR | 100-123 | 5.550 |
| SoxS | 53-70 | 5.518 |
| PhoB | 98-117 | 5.378 |
| CpxR | 22-36 | 5.176 |