| TF name | Position | PWM scan score |
| PhoP | 277-293 | 10.304 |
| H-NS | 237-251 | 9.481 |
| GadE | 148-167 | 9.196 |
| OmpR | 87-106 | 9.098 |
| NarP | 121-127 | 8.911 |
| MetJ | 368-375 | 8.875 |
| GalS | 12-27 | 8.296 |
| GalR | 12-27 | 8.296 |
| GlpR | 349-368 | 8.088 |
| DeoR | 96-111 | 8.065 |
| Fis | 272-292 | 8.036 |
| PhoB | 378-397 | 7.883 |
| FruR | 165-182 | 7.372 |
| Lrp | 344-355 | 7.328 |
| TorR | 84-93 | 7.186 |
| FNR | 350-371 | 7.075 |
| Ada | 234-261 | 7.073 |
| NagC | 77-99 | 6.954 |
| MalT | 332-341 | 6.923 |
| SoxS | 376-393 | 6.823 |
| RcsB | 342-355 | 6.581 |
| Nac | 271-285 | 6.554 |
| NarL | 12-18 | 6.467 |
| RhaS | 17-33 | 6.313 |
| IHF | 279-291 | 6.233 |
| CRP | 92-113 | 6.198 |
| LexA | 241-260 | 6.003 |
| MarA | 99-119 | 5.991 |
| GntR | 8-27 | 5.897 |
| ArgR | 245-260 | 5.885 |
| UlaR | 258-277 | 5.884 |
| CueR | 144-162 | 5.420 |
| NorR | 4-20 | 5.391 |
| AgaR | 49-72 | 5.358 |
| ArgP | 387-399 | 5.211 |
| UxuR | 272-289 | 5.157 |
| TyrR | 277-298 | 5.151 |
| AraC | 351-368 | 5.014 |