| TF name | Position | PWM scan score |
| TyrR | 362-383 | 11.239 |
| H-NS | 287-301 | 8.607 |
| CueR | 228-246 | 8.315 |
| MarA | 58-78 | 8.201 |
| NarP | 362-368 | 8.118 |
| GntR | 272-291 | 8.107 |
| LacI | 368-388 | 8.072 |
| NarL | 389-395 | 7.740 |
| ArgP | 367-379 | 7.434 |
| TorR | 175-184 | 7.293 |
| IHF | 362-374 | 7.012 |
| UxuR | 341-358 | 6.530 |
| RhaS | 176-192 | 6.500 |
| MalT | 234-243 | 6.467 |
| GadE | 73-92 | 6.347 |
| GlpR | 257-276 | 6.316 |
| Fur | 362-376 | 6.301 |
| DnaA | 124-132 | 5.954 |
| Fis | 341-361 | 5.830 |
| Lrp | 72-83 | 5.427 |
| Nac | 1-15 | 5.400 |
| FadR | 240-256 | 5.192 |